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-====== Publications ====== +====== Publications using SCONE ====== 
-<callout type="info" icon="true" title="If SCONE is helpful for your research, please cite the following paper"> +If SCONE is helpful for your research, please cite the following paper:
-Geijtenbeek, T (2019). SCONE: Open Source Software for Predictive Simulation of Biological Motion. Journal of Open Source Software, 4(38), 1421, https://doi.org/10.21105/joss.01421</callout>+
  
-Below is a non-extensive list of publications that use SCONE. Is your publication missing? Please leave a message at the [[https://simtk.org/plugins/phpBB/indexPhpbb.php?group_id=1180&pluginname=phpBB|SCONE User Forum]].+  @article{ Geijtenbeek2019, 
 +    author = {Thomas Geijtenbeek}, 
 +    title = {SCONE: Open Source Software for Predictive Simulation of Biological Motion}, 
 +    journal = {Journal of Open Source Software} 
 +    year = {2019}, 
 +    volume = {4}, 
 +    number = {38}, 
 +    pages = {1421}, 
 +    publisher = {The Open Journal}, 
 +    doi = {10.21105/joss.01421}, 
 +    url = {https://doi.org/10.21105/joss.01421}, 
 +  }
  
-Jabeen, S., Berry, A., Geijtenbeek, T., Harlaar, J., & Vallery, H. (2019). Assisting gait with free moments or joint moments on the swing leg. IEEE International Conference on Rehabilitation Robotics, 2019-June(June), 1079–1084. https://doi.org/10.1109/ICORR.2019.8779389+If you are using the [[hyfydy|Hyfydy Simulation Engine]] in your research, please add the following citation: 
 +  @misc{Geijtenbeek2021Hyfydy, 
 +    author = {Geijtenbeek, Thomas}, 
 +    title = {The {Hyfydy} Simulation Software}, 
 +    year = {2021}, 
 +    month = {11}, 
 +    url = {https://hyfydy.com}, 
 +    note = {\url{https://hyfydy.com}} 
 +  } 
 +   
 +Below is a **non-exhaustive** list of publications that used SCONE for their research. Please note this list is not complete -- see [[https://scholar.google.com/scholar?cites=15441289195668933724&as_sdt=2005&sciodt=0,5&hl=en|Google Scholar]] for all citing articles.
  
-Ping, C. C., Ting, Y. Y., Gouwanda, D., Gopalai, A. A., & Zheng, C. Y. (2021). The Effect of Quadriceps Contractures on Gait and its Adaptation Strategy. 2020 IEEE-EMBS Conference on Biomedical Engineering and Sciences (IECBES), 35–40. https://doi.org/10.1109/IECBES48179.2021.9398766+<callout type="question" icon="true" title="Is your publication missing?"> 
 +Please leave a message at the [[https://simtk.org/plugins/phpBB/indexPhpbb.php?group_id=1180&pluginname=phpBB|SCONE User Forum]] to get it included in the list. 
 +</callout>
  
-Ratnakumar, N., & Zhou, X. (2021). OPTIMIZED TORQUE ASSISTANCE DURING WALKING WITH AN IDEALIZED HIP EXOSKELETON. Proceedings of the ASME 2021.+==== 2023 ==== 
 +Lassmann, C., Ilg, W., Rattay, T. W., Schöls, L., Giese, M., & Haeufle, D. F. B. (2023). Dysfunctional neuro-muscular mechanisms explain gradual gait changes in prodromal spastic paraplegia. [[https://jneuroengrehab.biomedcentral.com/articles/10.1186/s12984-023-01206-8|Journal of NeuroEngineering and Rehabilitation, 20(1), 1–19]]. 
 + 
 +Jabeen, S., Baines, P. M., Harlaar, J., Vallery, H., & Berry, A. (2023). Reaction moments matter when designing lower-extremity robots for tripping recovery. [[https://doi.org/10.1371/journal.pone.0280158|PLoS ONE, 18(2 February), 1–27]]. 
 + 
 +==== 2022 ==== 
 +Muñoz, D., De Marchis, C., Gizzi, L., & Severini, G. (2022). Predictive simulation of sit-to-stand based on reflexive-controllers. PloS One, 17(12), e0279300. [[https://doi.org/10.1371/journal.pone.0279300]]. 
 + 
 +Koelewijn, A. D., & Bogert, A. J. van den. (2022). Antagonistic Co-contraction Can Minimise Muscular Effort in Systems with Uncertainty. PeerJ, 1–23. [[https://doi.org/10.7717/peerj.13085]]. 
 + 
 +==== 2021 ==== 
 +Russo, A. Di, Stanev, D., Armand, S., & Ijspeert, A. (2021). Sensory modulation of gait characteristics in human locomotion: A neuromusculoskeletal modeling study. PLoS Computational Biology (Vol. 17). https://doi.org/10.1371/journal.pcbi.1008594
  
 Veerkamp, K., Waterval, N. F. J., Geijtenbeek, T., Carty, C. P., Lloyd, D. G., Harlaar, J., & van der Krogt, M. M. (2021). Evaluating cost function criteria in predicting healthy gait. Journal of Biomechanics, 123, 110530. https://doi.org/10.1016/j.jbiomech.2021.110530 Veerkamp, K., Waterval, N. F. J., Geijtenbeek, T., Carty, C. P., Lloyd, D. G., Harlaar, J., & van der Krogt, M. M. (2021). Evaluating cost function criteria in predicting healthy gait. Journal of Biomechanics, 123, 110530. https://doi.org/10.1016/j.jbiomech.2021.110530
  
-Waterval, N. F. J., Veerkamp, K., Geijtenbeek, T., Harlaar, J., Nollet, F., Brehm, M. A., & van der Krogt, M. M. (2021). Validation of forward simulations to predict the effects of bilateral plantarflexor weakness on gait. Gait and Posture, 87(December 2020), 33–42. https://doi.org/10.1016/j.gaitpost.2021.04.020+Ping, C. C., Ting, Y. Y., Gouwanda, D., Gopalai, A. A., & Zheng, C. Y. (2021). The Effect of Quadriceps Contractures on Gait and its Adaptation Strategy. 2020 IEEE-EMBS Conference on Biomedical Engineering and Sciences (IECBES), 35–40. https://doi.org/10.1109/IECBES48179.2021.9398766
  
-Russo, A. Di, Stanev, D., Armand, S., & Ijspeert, A. (2021). Sensory modulation of gait characteristics in human locomotion: A neuromusculoskeletal modeling study. In PLoS Computational Biology (Vol. 17). https://doi.org/10.1371/journal.pcbi.1008594+Ratnakumar, N. and Zhou, X. (2021). Optimized Torque Assistance during Walking with an Idealized Hip Exoskeleton. International Design Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC-CIE), paper number: IDETC2021-71376, pp. 1-10, 2021. 
 + 
 +==== 2020 ==== 
 +Waterval, N. F. J., Veerkamp, K., Geijtenbeek, T., Harlaar, J., Nollet, F., Brehm, M. A., & van der Krogt, M. M. (2020). Validation of forward simulations to predict the effects of bilateral plantarflexor weakness on gait. Gait and Posture, 87(December 2020), 33–42. https://doi.org/10.1016/j.gaitpost.2021.04.020
  
 Li, X., Chen, J., Wang, W., Zhang, F., Han, H., & Zhang, J. (2020). Using Predictive Simulation Methods to Design Suitable Assistance Modes for Human Walking on Slopes. 2020 3rd International Conference on Control and Robots, ICCR 2020, 169–175. https://doi.org/10.1109/ICCR51572.2020.9344320 Li, X., Chen, J., Wang, W., Zhang, F., Han, H., & Zhang, J. (2020). Using Predictive Simulation Methods to Design Suitable Assistance Modes for Human Walking on Slopes. 2020 3rd International Conference on Control and Robots, ICCR 2020, 169–175. https://doi.org/10.1109/ICCR51572.2020.9344320
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 Wang, Y., Liu, Z., Zhu, L., Li, X., & Wang, H. (2020). An impedance control method of lower limb exoskeleton rehabilitation robot based on predicted forward dynamics. Proceedings - 2020 IEEE 19th International Conference on Trust, Security and Privacy in Computing and Communications, TrustCom 2020, 1515–1518. https://doi.org/10.1109/TrustCom50675.2020.00206 Wang, Y., Liu, Z., Zhu, L., Li, X., & Wang, H. (2020). An impedance control method of lower limb exoskeleton rehabilitation robot based on predicted forward dynamics. Proceedings - 2020 IEEE 19th International Conference on Trust, Security and Privacy in Computing and Communications, TrustCom 2020, 1515–1518. https://doi.org/10.1109/TrustCom50675.2020.00206
  
 +==== 2019 ====
 Ong, C. F., Geijtenbeek, T., Hicks, J. L., & Delp, S. L. (2019). Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. PLoS Computational Biology, 15(10), e1006993. https://doi.org/10.1371/journal.pcbi.1006993 Ong, C. F., Geijtenbeek, T., Hicks, J. L., & Delp, S. L. (2019). Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. PLoS Computational Biology, 15(10), e1006993. https://doi.org/10.1371/journal.pcbi.1006993
  
-Geijtenbeek, T. (2019). SCONE: Open Source Software for Predictive Simulation of Biological Motion. Journal of Open Source Software, 4(38), 1421. https://doi.org/10.21105/joss.01421+Jabeen, S., Berry, A., Geijtenbeek, T., Harlaar, J., & Vallery, H. (2019). Assisting gait with free moments or joint moments on the swing leg. IEEE International Conference on Rehabilitation Robotics, 2019-June(June), 1079–1084. https://doi.org/10.1109/ICORR.2019.8779389