doc:par

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doc:par [2021/06/28 10:54] – created thomasdoc:par [2022/08/11 14:01] thomas
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 ===== The .par File Format ===== ===== The .par File Format =====
-The (intermediate) results of a SCONE optimization in files ending with ''.par''. These are ASCII text files containing rows with four columnsrepresenting//parameter name//, //population best//, //population mean//, and //population standard deviation//.+Results of a SCONE optimization are stored in files with the extension ''.par''. These are simple text files that can be opened and edited in any text editorsuch as Notepad. An example of a ''.par'' file looks like this: 
 +<code> 
 +hamstrings.Y0 0.079006554 0.080354041 0.0030859574  
 +hamstrings.DT0 0.18357905 0.18262167 0.0020438415  
 +hamstrings.Y1 0.99631354 0.99773909 0.0021345281  
 +glut_max.Y0    0.0030265725 0.00090351607 0.0023974136  
 +glut_max.DT0  0.18576085 0.18489914 0.0023322994  
 +glut_max.Y1    0.97591333 0.96204519 0.011154533  
 +iliopsoas.Y0  0.063535723 0.066836841 0.00292421  
 +iliopsoas.DT0 0.2577093 0.25523808 0.0032948857  
 +iliopsoas.Y1  0.012638463 0.01207388 0.0021846832  
 +vasti.Y0      0.33502507 0.33535013 0.0023554187  
 +vasti.DT0      0.23620274 0.23461746 0.002213263  
 +vasti.Y1      0.9983738 0.99889626 0.0014473442  
 +gastroc.Y0    0.12005251 0.12699089 0.0086746784  
 +gastroc.DT0    0.17422729 0.17466229 0.0029011355  
 +gastroc.Y1    0.91680673 0.91024939 0.0047795053  
 +soleus.Y0      0.026056273 0.023415652 0.0022664883  
 +soleus.DT0    0.44584536 0.44439399 0.0045637694  
 +soleus.Y1      0.99696958 0.99883811 0.0020101872  
 +tib_ant.Y0    0.98317756 0.98368097 0.0044341653  
 +tib_ant.DT0    0.33641672 0.33378039 0.0033161401  
 +tib_ant.Y1    0.0083973917 0.010220621 0.0017648554  
 +</code>
  
-When playing back a result stored in a ''.par'' file, the //population best// value is used for each parameter. When using a ''.par'' file for initialization of an optimization, //population mean// and //population standard deviation// are used to represent the initial distribution.+There are four columns in this file, with the first column representing the parameter name. The subsequent columns represent //best value//, //mean value//and //standard deviation// of each of the parameters.
  
 +When playing back a result stored in a ''.par'' file, the //best// value is used for each parameter. When using a ''.par'' file for initialization of an optimization, //mean// and //standard deviation// are used to represent the initial distribution.